Genomics Facility
College of Agricultural and Environmental Sciences  
University of California, Davis  
 

SEARCH CRITERIA FOR

GenBank Accession Number:

(ie: CA348973)

UCD Number:

(ie: CTG1000345)

Keyword:

(ie: kinase)

Clonename:

(ie: CAP0002III_A01)

This database contains an analysis of all public expressed sequence tags( ESTs) from Vitis. ESTs are grouped as contigs or singletons and analyzed for homology to the NCBI Non-Redundant (NR) database by means of BLASTX. The resulting data can be queried by means of unique descriptors (eg. GenBank Numbers, UCD ID Numbers) or based on key words parsed from the NR definition lines of the top hits.

 

SIMILARITY SEARCH
 
 
 

SIMPLE SEQUENCE REPEATS for Vitis


Species

Dimer

Trimer

Tetramer
Total
Number

Vitis cinerea x Vitis rupestris

0

1

0

1

Vitis vinifera

400

420

66

886

Vitis aestivalis

17

21

2

40

Vitis d8909-15 (V. rupestris 'A. de Serres' x V. arizonica )

20

33

11

64

Vitis flexuosa

1

0

0

1

Vitis kelungensis

1

0

0

1

Vitis labrusca

0

1

0

1

Vitis shuttleworthii

2

3

1

6

All Vitis

441

479

80

1000
Type a Motif Pattern

 

 

 

  

 

 

 

 

 

All contig and singleton ESTs were analyzed for the presence of Simple Sequence Repeats (SSRs). The set of SSR-containing ESTs can be searched by entering a specific motif sequence or structure.

 
 

CONTIG AND SINGLETON SUMMARY FOR Vitis

Date of
Run		 Total Num
of Clones		 Number of
Contigs		 Number of
Singletons

06-Oct-03

146075

14681

14943