Genomics Facility
College of Agricultural and Environmental Sciences  
University of California, Davis  
 

SEARCH CRITERIA FOR

GenBank Accession Number:

(ie: BU047358)

UCD Number:

(ie: CTG1018129)

Keyword:

(ie: kinase)

Clonename:

(ie: PP_LEa0020C04f)

This database contains an analysis of all public expressed sequence tags( ESTs) from Prunus. ESTs are grouped as contigs or singletons and analyzed for homology to the NCBI Non-Redundant (NR) database by means of BLASTX. The resulting data can be queried by means of unique descriptors (eg. GenBank Numbers, UCD ID Numbers) or based on key words parsed from the NR definition lines of the top hits.

 

SIMILARITY SEARCH
 
 
 

SIMPLE SEQUENCE REPEATS for Prunus


Species

Dimer

Trimer

Tetramer
Total
Number

Prunus andersonii

2

0

0

2

Prunus armeniaca

97

32

2

131

Prunus avium

35

3

0

38

Prunus cerasus

2

0

1

3

Prunus dulcis

59

49

1

109

Prunus emarginata

1

0

0

1

Prunus fasciculata

2

0

0

2

Prunus ferganensis

2

0

0

2

Prunus fremontii

1

0

0

1

Prunus maritima

6

0

0

6

Prunus mexicana

1

0

0

1

Prunus microcarpa

1

0

0

1

Prunus mume

13

0

0

13

Prunus persica

148

220

15

383

Prunus salicina

35

3

0

38

Prunus serotina

1

0

1

2

Prunus subcordata

1

0

0

1

Prunus tomentosa

1

0

0

1

Prunus virginiana

1

0

0

1

All Prunus

409

307

20

736
Type a Motif Pattern

 

 

 

  

 

 

 

 

 

All contig and singleton ESTs were analyzed for the presence of Simple Sequence Repeats (SSRs). The set of SSR-containing ESTs can be searched by entering a specific motif sequence or structure.

 
 

CONTIG AND SINGLETON SUMMARY FOR Prunus

Date of
Run		 Total Num
of Clones		 Number of
Contigs		 Number of
Singletons

23-Aug-04

21644

2468

9165