Genomics Facility
College of Agricultural and Environmental Sciences  
University of California, Davis  
 

SEARCH CRITERIA FOR

GenBank Accession Number:

(ie: CV195501)

UCD Number:

(ie: CTG1056253)

Keyword:

(ie: kinase)

Clonename:

(ie: WSA0001_IIaR_A06)

This database contains an analysis of all public expressed sequence tags( ESTs) from Juglans. ESTs are grouped as contigs or singletons and analyzed for homology to the NCBI Non-Redundant (NR) database by means of BLASTX. The resulting data can be queried by means of unique descriptors (eg. GenBank Numbers, UCD ID Numbers) or based on key words parsed from the NR definition lines of the top hits.

 

SIMILARITY SEARCH
 
 
 

SIMPLE SEQUENCE REPEATS for Juglans


Species

Dimer

Trimer

Tetramer
Total
Number

Juglans nigra

14

0

0

14

Juglans regia

69

50

8

127

All Juglans

83

50

8

141
Type a Motif Pattern

 

 

 

  

 

 

 

 

 

All contig and singleton ESTs were analyzed for the presence of Simple Sequence Repeats (SSRs). The set of SSR-containing ESTs can be searched by entering a specific motif sequence or structure.

 
 

CONTIG AND SINGLETON SUMMARY FOR Juglans

Date of
Run		 Total Num
of Clones		 Number of
Contigs		 Number of
Singletons

23-Sep-04

5332

663

2120