Genomics Facility
College of Agricultural and Environmental Sciences  
University of California, Davis  
 

SEARCH CRITERIA FOR

GenBank Accession Number:

(ie: AB035273)

UCD Number:

(ie: CTG1076106)

Keyword:

(ie: kinase)

Clonename:

(ie: 010722ABBB001437HT)

This database contains an analysis of all public expressed sequence tags( ESTs) from Malus. ESTs are grouped as contigs or singletons and analyzed for homology to the NCBI Non-Redundant (NR) database by means of BLASTX. The resulting data can be queried by means of unique descriptors (eg. GenBank Numbers, UCD ID Numbers) or based on key words parsed from the NR definition lines of the top hits.

 

SIMILARITY SEARCH
 
 
 

SIMPLE SEQUENCE REPEATS for Malus


Species

Dimer

Trimer

Tetramer
Total
Number

Malus baccata

0

2

0

2

Malus sieboldii

33

6

1

40

Malus X domestica

1455

521

65

2041

All Malus

1488

529

66

2083
Type a Motif Pattern

 

 

 

  

 

 

 

 

 

All contig and singleton ESTs were analyzed for the presence of Simple Sequence Repeats (SSRs). The set of SSR-containing ESTs can be searched by entering a specific motif sequence or structure.

 
 

CONTIG AND SINGLETON SUMMARY FOR Malus

Date of
Run		 Total Num
of Clones		 Number of
Contigs		 Number of
Singletons

01-Oct-04

160620

20182

25232